Single Cell Web Tools

The single cell web tool provides key interactive and customizable functions including general information, clustering, heatmap and differential expression analysis for lncRNAs based on 49 single cell datasets. 49 lncRNA expression datasets associated with 20 human cancers based on single cell sequencing are obtained from GEO and published literatures. View our Help page for further help.

This feature allows the user to perform cluster analysis on single-cell data.

This function provides heatmap of differential expressed lncRNAs among diverse clusters.

This function allows users to obtain differential expression information and box plot of lncRNAs.

Information of Single Cell Datasets
ID Cancer Type Cell Number Cell Line/Tissue
Lnc_SingleCell01Glioblastoma177Cell Line: GSC/DGC
Lnc_SingleCell02Glioblastoma623Tissue: Brain
Lnc_SingleCell03Lung adenocarcinoma245Cell Line: LC-2/ad
Lnc_SingleCell04Lung adenocarcinoma126PDX
Lnc_SingleCell05Breast cancer369PDX
Lnc_SingleCell06Lung adenocarcinoma218Cell Line: A549
Lnc_SingleCell07Breast cancer317Tissue: Breast
Lnc_SingleCell08Melanoma307Tissue: Skin
Lnc_SingleCell09Non-small cell lung cancer3524Tissue: Lung
Lnc_SingleCell10Chronic myelogenous leukemia267Cell Line: K562
Lnc_SingleCell11Chronic myelogenous leukemia1877Tissue: Bone marrow
Lnc_SingleCell12Colorectal cancer290Tissue: Colon
Lnc_SingleCell13Melanoma575Cell Line: WM989
Lnc_SingleCell14Esophageal squamous cell carcinoma314Cell Line: KYSE-180
Lnc_SingleCell15Glioblastoma991Tissue: Brain
Lnc_SingleCell16Non-small cell lung cancer164Cell Line: PC-9
Lnc_SingleCell17Alveolar rhabdomyosarcoma6875Cell Line: Rh41
Lnc_SingleCell18High-grade glioma2772Tissue: Brain
Lnc_SingleCell19Cervix cancer126Cell Line: Hela
Lnc_SingleCell20Colorectal cancer99Cell Line: HCT-116
Lnc_SingleCell21Myxoid liposarcoma96Cell Line: MLS 1765-92
Lnc_SingleCell22Lung adenocarcinoma46Cell Line: PC-9
Lnc_SingleCell23Lung adenocarcinoma46Cell Line: VMRC-LCD
Lnc_SingleCell24Lung adenocarcinoma50Cell Line: H358
Lnc_SingleCell25Renal cell carcinoma35Tissue: Kidney
Lnc_SingleCell26Renal cell carcinoma83PDX
Lnc_SingleCell27Hepatocellular carcinoma26Tissue: Liver
Lnc_SingleCell28Acute myeloid leukemia24Tissue: Bone marrow
Lnc_SingleCell29Breast cancer70CTC
Lnc_SingleCell30Melanoma36Cell Line: WM989
Lnc_SingleCell31Melanoma86Cell Line: WM983B
Lnc_SingleCell32Chronic myelogenous leukemia91Cell Line: K562
Lnc_SingleCell33Non-small cell lung cancer47Cell Line: H1437
Lnc_SingleCell34Colorectal cancer51Cell Line: HCT-116
Lnc_SingleCell35Chronic myelogenous leukemia73Cell Line: K562
Lnc_SingleCell36Lung adenocarcinoma74Cell Line: A549
Lnc_SingleCell37Breast cancer33Cell Line: MDA-MB-231
Lnc_SingleCell38Breast cancer45Cell Line: MCF-7
Lnc_SingleCell39Neuroblastoma36Cell Line: Neuroblastoma cell line
Lnc_SingleCell40Bronchoalveolar carcinoma96Cell Line: H1650
Lnc_SingleCell41Lung adenocarcinoma96Cell Line: II18
Lnc_SingleCell42Non-small cell lung cancer96Cell Line: H1975
Lnc_SingleCell43Non-small cell lung cancer96Cell Line: H2228
Lnc_SingleCell44Chronic myelogenous leukemia50Cell Line: K562
Lnc_SingleCell45Pancreatic ductal adenocarcinoma96Cell Line: Pancreatic ductal adenocarcinoma cell lines
Lnc_SingleCell46Acute lymphoblastic leukemia24Cell Line: LOUCY/JURKAT
Lnc_SingleCell47Prostate cancer144Cell Line: LNCaP
Lnc_SingleCell48Hepatocellular carcinoma43Cell Line: HuH-1
Lnc_SingleCell49Hepatocellular carcinoma55Cell Line: HuH-7
Cluster

This feature allows the user to perform cluster analysis on single-cell data.

Sample: Select a sample for cluster.

Sample Select


Heatmap Plotting

This function provides heatmap of differential expressed lncRNAs among diverse clusters.

Sample: Select a sample for heatmap.

Sample Select


Differential Expression Analysis (DEA)

This function allows users to obtain differential expression information and box plot of lncRNAs.

Sample: Select a sample for differential analysis.

log2FC: Select a threshold value of fold change for differential analysis.

FDR: Select a threshold value of fdr for differential analysis.

Sample Select

log2FC

FDR